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Added support for conversion from in-situ temperature to potential temperature and vice versa, as well as potential density calculations.

interpolate
Michael Uleysky 2 years ago
parent
a40e8c9cff
commit
e89e52b269
5 changed files with 123 additions and 4 deletions
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  1. 2
      include/basedata.h
  2. 25
      include/gsw.h
  3. 3
      include/layereddata.h
  4. 93
      src/layereddata.cpp
  5. 2
      src/odm.cpp

2
include/basedata.h
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@ -42,6 +42,8 @@ class BaseData
size_t N() const { return data.size(); }
bool IsFill(size_t i) const { return V(i) == Fillval(); }
static real Fillval() { return fillval; }
explicit operator bool() const { return N() != 0; }

25
include/gsw.h
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@ -0,0 +1,25 @@
#pragma once
#include "gswteos-10.h"
inline double Temp2PTemp(double temp, double psal, double depth, double lon, double lat) { return gsw_pt0_from_t(gsw_sa_from_sp(psal, depth, lon, lat), temp, depth); }
inline double PTemp2Temp(double ptemp, double psal, double depth, double lon, double lat)
{
double sa = gsw_sa_from_sp(psal, depth, lon, lat);
return gsw_t_from_ct(sa, gsw_ct_from_pt(sa, ptemp), depth);
}
inline double PTemp2PDens(double ptemp, double psal, double depth, double lon, double lat) { return gsw_rho_t_exact(gsw_sa_from_sp(psal, depth, lon, lat), ptemp, 0.0) - 1000.0; }
inline double Temp2PDens(double temp, double psal, double depth, double lon, double lat)
{
return gsw_pot_rho_t_exact(gsw_sa_from_sp(psal, depth, lon, lat), temp, depth, 0.0) - 1000.0;
}
inline double PTemp2SSpeed(double ptemp, double psal, double depth, double lon, double lat)
{
double sa = gsw_sa_from_sp(psal, depth, lon, lat);
return gsw_sound_speed_t_exact(sa, gsw_t_from_ct(sa, gsw_ct_from_pt(sa, ptemp), depth), depth);
}
inline double Temp2SSpeed(double temp, double psal, double depth, double lon, double lat) { return gsw_sound_speed_t_exact(gsw_sa_from_sp(psal, depth, lon, lat), temp, depth); }

3
include/layereddata.h
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@ -1,6 +1,7 @@
#pragma once
#include "DataAdapters/ncfilealt.h"
#include "ParseArgs.h"
#include "gsw.h"
#include "mdatetime.h"
#include "simple2ddata.h"
#include <algorithm>
@ -220,7 +221,7 @@ class LayeredData
static MString StName2Name(const MString& stname)
{
if(stname == "sea_water_potential_temperature") return "temp";
if(stname == "sea_water_potential_temperature") return "ptemp";
if(stname == "sea_water_temperature") return "temp";
if(stname == "sea_water_salinity") return "sal";
if(stname == "ocean_mixed_layer_thickness_defined_by_sigma_theta") return "mld";

93
src/layereddata.cpp
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@ -18,6 +18,10 @@ MString LayeredData::Info() const
if(StName2Name(ret).Exist()) vars.emplace(StName2Name(ret));
}
}
if((vars.contains("ptemp") || vars.contains("temp")) && vars.contains("sal")) vars.emplace("pdens");
if(vars.contains("ptemp") && vars.contains("sal")) vars.emplace("temp");
if(vars.contains("temp") && vars.contains("sal")) vars.emplace("ptemp");
MString svars;
{
bool first = true;
@ -136,7 +140,14 @@ std::pair<const BaseParameters*, MString> LayeredData::Parameters(michlib_intern
if(!args.contains("var")) return {nullptr, "Variable not specified"};
ppar->varname = args.at("var");
if(!HaveVar(ppar->varname)) return {nullptr, "Variable " + ppar->varname + " not exists in this dataset"};
if(!HaveVar(ppar->varname))
{
bool varexist = false;
if(ppar->varname == "temp" && HaveVar("ptemp") && HaveVar("sal")) varexist = true;
if(ppar->varname == "ptemp" && HaveVar("temp") && HaveVar("sal")) varexist = true;
if(ppar->varname == "pdens" && (HaveVar("ptemp") || HaveVar("temp")) && HaveVar("sal")) varexist = true;
if(!varexist) return {nullptr, "Variable " + ppar->varname + " not exists in this dataset"};
}
if(args.contains("layer")) ppar->layer = args.at("layer").ToInteger<size_t>();
if(!args.contains("depth") && ppar->layer >= NDepths()) return {nullptr, MString("Layer ") + ppar->layer + " is too deep!"};
real depth = args.contains("depth") ? args.at("depth").ToReal() : Depth(ppar->layer);
@ -192,6 +203,86 @@ LayeredData::Data LayeredData::Read(const BaseParameters* ip, size_t i) const
auto p = dynamic_cast<const struct Parameters*>(ip);
auto [name, id, tid] = VarNameLoc(p->varname, times[i]);
if(!name.Exist()) // Conversion read
{
// ptemp from temp and sal
if(p->varname == "ptemp")
{
struct Parameters params = *p;
params.varname = "temp";
auto temp = Read(&params, i);
params.varname = "sal";
auto sal = Read(&params, i);
if(!(temp && sal)) return Data();
auto out = temp;
for(size_t ind = 0; ind < out.N(); ind++)
{
if(out.Lon(ind) != temp.Lon(ind) || out.Lon(ind) != sal.Lon(ind) || out.Lat(ind) != temp.Lat(ind) || out.Lat(ind) != sal.Lat(ind))
{
michlib::errmessage("Internal error");
exit(1);
}
if(temp.IsFill(ind) || sal.IsFill(ind))
out.V(ind) = out.Fillval();
else
out.V(ind) = Temp2PTemp(temp.V(ind), sal.V(ind), Depth(p->layer), out.Lon(ind), out.Lat(ind));
}
return out;
}
// temp from ptemp and sal
if(p->varname == "temp")
{
struct Parameters params = *p;
params.varname = "ptemp";
auto temp = Read(&params, i);
params.varname = "sal";
auto sal = Read(&params, i);
if(!(temp && sal)) return Data();
auto out = temp;
for(size_t ind = 0; ind < out.N(); ind++)
{
if(out.Lon(ind) != temp.Lon(ind) || out.Lon(ind) != sal.Lon(ind) || out.Lat(ind) != temp.Lat(ind) || out.Lat(ind) != sal.Lat(ind))
{
michlib::errmessage("Internal error");
exit(1);
}
if(temp.IsFill(ind) || sal.IsFill(ind))
out.V(ind) = out.Fillval();
else
out.V(ind) = PTemp2Temp(temp.V(ind), sal.V(ind), Depth(p->layer), out.Lon(ind), out.Lat(ind));
}
return out;
}
// pdens from temp and sal
if(p->varname == "pdens")
{
struct Parameters params = *p;
bool tempispot = HaveVar("ptemp");
params.varname = tempispot ? "ptemp" : "temp";
auto temp = Read(&params, i);
params.varname = "sal";
auto sal = Read(&params, i);
if(!(temp && sal)) return Data();
auto out = temp;
for(size_t ind = 0; ind < out.N(); ind++)
{
if(out.Lon(ind) != temp.Lon(ind) || out.Lon(ind) != sal.Lon(ind) || out.Lat(ind) != temp.Lat(ind) || out.Lat(ind) != sal.Lat(ind))
{
michlib::errmessage("Internal error");
exit(1);
}
if(temp.IsFill(ind) || sal.IsFill(ind))
out.V(ind) = out.Fillval();
else
out.V(ind) = tempispot ? PTemp2PDens(temp.V(ind), sal.V(ind), Depth(p->layer), out.Lon(ind), out.Lat(ind))
: Temp2PDens(temp.V(ind), sal.V(ind), Depth(p->layer), out.Lon(ind), out.Lat(ind));
}
return out;
}
return Data();
}
// Direct read
auto head = nc[id]->Header();
for(const auto& v: head.Variables())
if(v.Name() == name)

2
src/odm.cpp
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@ -13,7 +13,7 @@ inline void Usage(const MString& arg0)
message(" dataset. Can be Forecast, Hindcast or Reanalysis. Default: Forecast");
message(" Keys for action=tsc. Get temperature, salinity, chlorofill from dataset.");
message(" source. Required. May be: NEMO");
message(" var. Required. May be: temp, sal, chl, mld, ssh or w.");
message(" var. Required. May be: temp, ptemp, pdens, sal, chl, mld, ssh or w.");
message(" time. Time moment or regular expression. If present, timeb and timee must be absent");
message(" timeb, timee. Time interval. If present, time must be absent");
message(" out. Output file. Default: out.bin");

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