#pragma once #include "GPL.h" #include "cache.h" #include "curlfuncs.h" #include "nczarrcommon.h" #include #include class ZarrTypes: public NcZarrTypes { protected: template class ReadedData { //public: using Vec = std::vector; private: Vec start, chunkstart; ArrCounter mainind, chunkind, inchunkind; std::vector> data; public: ReadedData(): mainind(Vec()), chunkind(Vec()), inchunkind(Vec()) {} ReadedData(size_t N, const size_t* start, const size_t* count, const size_t* csize, std::vector>&& d): start(start, start + N), chunkstart( [](size_t N, const size_t* st, const size_t* cs) { Vec out(N); for(size_t i = 0; i < N; i++) out[i] = st[i] / cs[i]; return out; }(N, start, csize)), mainind(Vec(count, count + N)), chunkind( [](size_t N, const size_t* st, const size_t* cn, const size_t* cs) { Vec out(N); for(size_t i = 0; i < N; i++) out[i] = (st[i] + cn[i]) / cs[i] - st[i] / cs[i] + 1; return out; }(N, start, count, csize)), inchunkind(Vec(csize, csize + N)), data(std::move(d)) { } VType operator()(size_t lini) const { Vec ind = mainind.Index(lini, mainind.Count()); Vec cind(ind.size()), inind(ind.size()); for(size_t i = 0; i < ind.size(); i++) { cind[i] = (ind[i] + start[i]) / inchunkind.Count(i) - chunkstart[i]; // indes of chunk inind[i] = (ind[i] + start[i]) % inchunkind.Count(i); // index inside chunk } size_t chunk = chunkind.Index(cind); size_t inside = inchunkind.Index(inind); return data[chunk][inside]; } }; private: // Create attribute from json value static AttVT CreateAtt(const Json::Value& val) { if(val.type() == Json::intValue) return AttVT{std::in_place_type, val.asInt64()}; if(val.type() == Json::uintValue) return AttVT(std::in_place_type, val.asUInt64()); if(val.type() == Json::realValue) return AttVT(std::in_place_type, val.asDouble()); if(val.type() == Json::stringValue) { auto str = val.asString(); return AttVT(std::in_place_type, MString(str.c_str(), str.size())); } if(val.type() == Json::booleanValue) return AttVT(std::in_place_type, val.asBool()); return AttVT(); } public: // Read attributes from .zattrs static auto ReadAtts(const Json::Value& obj) { std::vector out; if(obj.type() != Json::objectValue) return out; const auto keys = obj.getMemberNames(); for(const auto& key: keys) if(key != "_ARRAY_DIMENSIONS") out.emplace_back(key, CreateAtt(obj[key])); return out; } }; class ZarrFunctions: public ZarrTypes { std::unique_ptr cache; CURLRAII chandle; MString url; std::vector> chunks; // Find variable names in metadata static std::vector ReadVarNames(const Json::Value& meta); Error AddVar(const MString& name, const Json::Value& zattrs, const Json::Value& zarray); protected: ZarrFunctions() { auto oldprefix = michlib::GPL.UsePrefix("ZARR"); cache.reset(CreateCache(michlib::GPL.ParameterSValue("Cache", ""))); michlib::GPL.UsePrefix(oldprefix); if(!cache) { michlib::errmessage("Can't init data cache"); cache.reset(new FakeCache); } } template RetVal> Read(const MString& var, const size_t* start, const size_t* count) const { using Vec = std::vector; size_t ind = FindInd(var, vars); const size_t N = vars[ind].NDim(); const auto& csize = chunks[ind]; Vec chunkstart( [](size_t N, const size_t* st, const size_t* cs) { Vec out(N); for(size_t i = 0; i < N; i++) out[i] = st[i] / cs[i]; return out; }(N, start, csize.data())); ArrCounter chunkind( [](size_t N, const size_t* st, const size_t* cn, const size_t* cs) { Vec out(N); for(size_t i = 0; i < N; i++) out[i] = (st[i] + cn[i] - 1) / cs[i] - st[i] / cs[i] + 1; return out; }(N, start, count, csize.data())); bool havefill = vars[ind].Fill().index() > 0; VType fill = std::visit( [](auto v) { if constexpr(std::is_convertible_v) return static_cast(v); else return std::numeric_limits::max(); }, vars[ind].Fill()); std::vector> cdata; size_t chunksize = 1; for(const auto c: csize) chunksize *= c; cdata.resize(chunkind.N()); for(; chunkind; ++chunkind) { cdata[chunkind.Index()].reset(new VType[chunksize]); auto res = GetChunk(var, chunkind.VIndex(chunkstart), chunksize, sizeof(VType), cdata[chunkind.Index()].get(), havefill ? &fill : nullptr); if(!res) return res; } return ReadedData(N, start, count, csize.data(), std::move(cdata)); } Error GetChunk(const MString& var, const std::vector& chunkind, size_t chunksize, size_t elsize, void* data, const void* fill) const; public: Error Open(const MString& product, const MString& dataset, bool time = true); }; using Zarr = NcZarrRead;