#pragma once #include "DataAdapters/ncfilealt.h" #include "mdatetime.h" #include "simple2ddata.h" #include "specfunc.h" #include "vartype.h" #include #include #include #include using michlib::Ceil; using michlib::Floor; using michlib::int2; using michlib::MDateTime; using michlib::NCFileA; using michlib::ToGeoDomainNeg; class NEMOData { enum Type { TYPE_UNKNOWN, TYPE_DT, TYPE_NRT, TYPE_NRT6 }; std::vector nc; size_t xb, yb, xe, ye, layer; std::vector depths; std::vector times; size_t nx; Type type = TYPE_UNKNOWN; class EnvVar { MString name, oldvalue; bool activated, saved; public: EnvVar(): activated(false) {} ~EnvVar() { Deactivate(); } void Activate(const MString& var, const MString& val) { if(activated) Deactivate(); name = var; char* curval = getenv(name.Buf()); if(nullptr == curval) saved = false; else { oldvalue = curval; saved = true; } setenv(name.Buf(), val.Buf(), 1); } void Deactivate() { if(!activated) return; if(saved) setenv(name.Buf(), oldvalue.Buf(), 1); else unsetenv(name.Buf()); activated = false; } }; EnvVar proxy; public: using Data = Simple2DData; private: template Data ReadVarRaw(const NCFileA& f, const MString& name, size_t i, bool nodepth) const { real unitmul = 1.0; DataType fill; real offset = 0.0, scale = 1.0; { auto a_fill = f.A(name, "_FillValue"); auto a_offset = f.A(name, "add_offset"); auto a_scale = f.A(name, "scale_factor"); if(!a_fill) return Data(); fill = a_fill; if(a_offset) offset = a_offset; if(a_scale) scale = a_scale; } auto unit = f.A(name, "units"); if(unit && unit.Get() == "m s-1") unitmul = 100.0; Data data((xb < xe) ? (xe - xb + 1) : (nx + xe - xb + 1), ye - yb + 1, Lonb(), Latb()); if(xb < xe) { auto var = nodepth ? f.V(name, {"longitude", xb, xe - xb + 1}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}) : f.V(name, {"longitude", xb, xe - xb + 1}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}, {"depth", layer, 1}); if(!var) return Data(); if(var.DimLen(0) != data.Nx() || var.DimLen(1) != data.Ny()) return Data(); for(size_t ix = 0; ix < var.DimLen(0); ix++) for(size_t iy = 0; iy < var.DimLen(1); iy++) { DataType v = var(ix, iy); data(ix, iy) = (v == fill) ? Data::Fillval() : ((v * scale + offset) * unitmul); } } else { auto var1 = nodepth ? f.V(name, {"longitude", xb}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}) : f.V(name, {"longitude", xb}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}, {"depth", layer, 1}); auto var2 = nodepth ? f.V(name, {"longitude", 0, xe + 1}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}) : f.V(name, {"longitude", 0, xe + 1}, {"latitude", yb, ye - yb + 1}, {"time", i, 1}, {"depth", layer, 1}); if(!(var1 && var2)) return Data(); if((var1.DimLen(0) + var2.DimLen(0)) != data.Nx() || var1.DimLen(1) != data.Ny() || var2.DimLen(1) != data.Ny()) return Data(); for(size_t ix = 0; ix < var1.DimLen(0); ix++) for(size_t iy = 0; iy < var1.DimLen(1); iy++) { DataType v = var1(ix, iy); data(ix, iy) = (v == fill) ? Data::Fillval() : ((v * scale + offset) * unitmul); } for(size_t ix = 0; ix < var2.DimLen(0); ix++) for(size_t iy = 0; iy < var2.DimLen(1); iy++) { DataType v = var2(ix, iy); data(ix + var1.DimLen(0), iy) = (v == fill) ? Data::Fillval() : ((v * scale + offset) * unitmul); } } return data; } public: Data ReadVar(const MString& name, size_t i) const { if(!isOk()) return Data(); bool nodepth = false; for(const auto& f: nc) { auto head = f.Header(); for(const auto& v: head.Variables()) if(v.Name() == name) { if(v.Dimensions().size() == 3) nodepth = true; if(v.Type().Id() == NC_SHORT) return ReadVarRaw(f, name, i, nodepth); if(v.Type().Id() == NC_FLOAT) return ReadVarRaw(f, name, i, nodepth); } } return Data(); } Data ReadVar(const MString& name, const std::vector& tindex) const { Data out; if(tindex.size() == 0 || !isOk()) return out; std::vector count; for(size_t i = 0; i < tindex.size(); i++) { Data dat = ReadVar(name, tindex[i]); if(!dat) return Data(); out.Add(dat, count); } out.Div(count); return out; } public: NEMOData() = default; // TODO: RetVal bool Open(const MString& stype, const MString& cred, const MString& proxyurl = "") { nc.clear(); if(proxyurl.Exist()) proxy.Activate("all_proxy", proxyurl); if(stype == "DT") { NCFileA newnc; newnc.Reset("https://" + cred + "@my.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy_my_0.083_P1D-m"); if(!newnc) return false; nc.push_back(std::move(newnc)); type = TYPE_DT; } if(stype == "NRT") { std::vector urls{"https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-cur_anfc_0.083deg_P1D-m", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-thetao_anfc_0.083deg_P1D-m", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-so_anfc_0.083deg_P1D-m", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy_anfc_0.083deg_P1D-m", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-wcur_anfc_0.083deg_P1D-m"}; for(const auto& url: urls) { NCFileA newnc; newnc.Reset(url); if(!newnc) { nc.clear(); return false; } nc.push_back(std::move(newnc)); } type = TYPE_NRT; } if(stype == "NRT6") { std::vector urls{"https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-cur_anfc_0.083deg_PT6H-i", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-thetao_anfc_0.083deg_PT6H-i", "https://" + cred + "@nrt.cmems-du.eu/thredds/dodsC/cmems_mod_glo_phy-so_anfc_0.083deg_PT6H-i"}; for(const auto& url: urls) { NCFileA newnc; newnc.Reset(url); if(!newnc) { nc.clear(); return false; } nc.push_back(std::move(newnc)); } type = TYPE_NRT6; } auto rdepths = nc[0].V("depth"); if(!rdepths) { nc.clear(); return false; } depths.resize(rdepths.DimLen(0)); for(size_t i = 0; i < depths.size(); i++) depths[i] = rdepths(i); auto timeD = nc[0].V("time"); auto timeF = nc[0].V("time"); if(!(timeD || timeF)) { nc.clear(); return false; } MDateTime refdate("1950-01-01"); timeD ? times.resize(timeD.DimLen(0)) : times.resize(timeF.DimLen(0)); for(size_t i = 0; i < times.size(); i++) times[i] = refdate + static_cast(timeD ? timeD(i) : timeF(i)) * 3600; return true; } MString Info() const { MString d; for(size_t i = 0; i < NDepths(); i++) d += MString(" ") + "(" + i + " " + Depth(i) + ")"; std::set vars; for(const auto& f: nc) { auto head = f.Header(); for(const auto& v: head.Variables()) { if(v.Name() == "thetao") vars.emplace("temp"); if(v.Name() == "so") vars.emplace("sal"); if(v.Name() == "mlotst") vars.emplace("mld"); if(v.Name() == "zos") vars.emplace("ssh"); if(v.Name() == "wo") vars.emplace("w"); } } MString svars; { bool first = true; for(const auto& v: vars) { svars += (first ? "" : ", ") + v.ShortName(); first = false; } } // clang-format off return "Dataset: " + Title() + "\n" + " Begin date: " + Time(0).ToString() + "\n" + " End date: " + Time(NTimes()-1).ToString() + "\n" + " Time step: " + Timestep() + " seconds\n" + " Time moments: " + NTimes() + "\n" + " Depths:" + d + "\n" + " Supported variables: " + svars; // clang-format on } MString Dump() const { // clang-format off return "Current settings:\n" + MString() + " Longitudes: from " + Lonb() + " (" + xb + ") to "+ Lone() + " (" + xe + ")\n" + " Latitudes: from " + Latb() + " (" + yb + ") to "+ Late() + " (" + ye + ")\n" + " Depth: layer " + layer + ", depth " + Depth() + " m\n"; // clang-format on } bool SetRegion(real lonbin, real lonein, real latb, real late, real depth) { if(!isOk()) return false; real lonb = ToGeoDomainNeg(lonbin), lone = ToGeoDomainNeg(lonein); size_t xb_, xe_, yb_, ye_, layer_ = 0; yb_ = static_cast(Floor((latb + 80.0) * 12.0)); ye_ = static_cast(Ceil((late + 80.0) * 12.0)); if(ye_ > 2040) ye_ = 2040; if(yb_ >= ye_) return false; xb_ = static_cast(Floor((lonb + 180.0) * 12.0)); xe_ = static_cast(Ceil((lone + 180.0) * 12.0)); if(xb_ == xe_) return false; if(depth < 0.0 || depth > depths.back()) layer_ = (depth < 0.0) ? 0 : (depths.size() - 1); else for(size_t i = 0; i < depths.size() - 1; i++) { if(depth >= depths[i] && depth <= depths[i + 1]) { layer_ = (depth - depths[i] <= depths[i + 1] - depth) ? i : (i + 1); break; } } xb = xb_; xe = xe_; yb = yb_; ye = ye_; layer = layer_; return true; } real Lonb() const { return isOk() ? (-180.0 + xb / 12.0) : -1000.0; } real Lone() const { return isOk() ? (-180.0 + xe / 12.0) : -1000.0; } real Latb() const { return isOk() ? (-80.0 + yb / 12.0) : -1000.0; } real Late() const { return isOk() ? (-80.0 + ye / 12.0) : -1000.0; } size_t Xb() const { return isOk() ? xb : 0; } size_t Xe() const { return isOk() ? xe : 0; } size_t Yb() const { return isOk() ? yb : 0; } size_t Ye() const { return isOk() ? ye : 0; } size_t Nx() const { return isOk() ? ((xb < xe) ? (xe - xb + 1) : (nx + xe - xb + 1)) : 0; } size_t Ny() const { return isOk() ? (ye - yb + 1) : 0; } real Depth(size_t l) const { return isOk() ? depths[l] : -1000.0; } real Depth() const { return Depth(layer); } size_t Layer() const { return layer; } time_t Timestep() const { return isOk() ? (times[1] - times[0]) : 0; } MDateTime Time(size_t i) const { if(!isOk() || i >= times.size()) return MDateTime(); return times[i]; } bool isOk() const { return nc.size() > 0; } explicit operator bool() const { return nc.size() > 0; } size_t NDepths() const { return depths.size(); } size_t NTimes() const { return times.size(); } template Data Read(size_t it) const = delete; template Data Read(const std::vector& tindex) const = delete; MString Title() const { switch(type) { case(TYPE_DT): return "NEMO Delayed time, daily mean (DT)"; case(TYPE_NRT): return "NEMO Near-real time, daily mean (NRT)"; case(TYPE_NRT6): return "NEMO Near-real time, 6h resolution (NRT6)"; default: return "No title"; } } static real Fillval() { return Data::Fillval(); } }; template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("uo", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("vo", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("thetao", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("so", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("mlotst", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("zos", it); } template<> inline NEMOData::Data NEMOData::Read(size_t it) const { return ReadVar("wo", it); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("uo", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("vo", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("thetao", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("so", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("mlotst", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("zos", tindex); } template<> inline NEMOData::Data NEMOData::Read(const std::vector& tindex) const { return ReadVar("wo", tindex); }