odm/sources/MODISBINLOCAL.cpp

#define MICHLIB_NOSOURCE
#include "MODISBINLOCAL.h"

MString MODISBINLOCALData::Info() const
{
 MString ds = "";
 for(size_t i = 0; i < dataset.size(); i++)
 {
  if(i != 0) ds += " ";
  ds += dataset[i];
 }

 // clang-format off
 return
  "Dataset: MODIS Level-3 Binned Data 4.6 km - " + ds + "\n" +
  " Begin date: " + Time(0).ToString() + "\n" +
  " End date: " + Time(NTimes()-1).ToString() + "\n" +
  " Time moments: " + NTimes() + "\n" +
  " Supported variables: temp, chl";
 // clang-format on
}

MString MODISBINLOCALData::Open(const CLArgs& args)
{
 GPL.UsePrefix("MODISBINLOCAL");
 datapath = GPL.ParameterSValue("Datapath", "");
 MString var, datasetstr;
 if(!args.contains("var") && !args.contains("dataset")) var = "temp";
 if(args.contains("var"))
 {
  var = args.at("var");
  if(var != "temp" && var != "chl") return "Unknown variable: " + var;
 }
 if(var.Exist() && !args.contains("dataset")) datasetstr = (var == "temp") ? "ALL" : "CHL";
 if(args.contains("dataset")) datasetstr = args.at("dataset");

 bool ischl = SufFromDataset(datasetstr);
 if(dataset.size() == 0) return "Incorrect dataset: " + datasetstr;
 if(!var.Exist()) var = ischl ? "chl" : "temp";
 if((var == "temp" && ischl) || (var == "chl" && !ischl)) return "Arguments dataset and var are in contradiction";

 MString regstring = "([0-9]{4}-[0-9]{2}-[0-9]{2})_(";
 for(size_t i = 0; i < dataset.size(); i++)
 {
  if(i != 0) regstring += "|";
  regstring += dataset[i];
 }
 regstring += ").nc";

 RegExp regex(regstring.Buf());
 regex.Compile();

 DIR*           dir = opendir(datapath.Buf());
 struct dirent* de;
 if(nullptr == dir) return "Can't open directory " + datapath;
 while((de = readdir(dir)))
 {
  if(!regex.Match(de->d_name)) continue;
  times.emplace_back(MString(de->d_name + regex.Off(1), regex.Len(1)));
 }
 closedir(dir);
 std::sort(times.begin(), times.end());
 auto last = std::unique(times.begin(), times.end());
 times.erase(last, times.end());
 times.shrink_to_fit();
 return "";
}

std::pair<const BaseParameters*, MString> MODISBINLOCALData::Parameters(michlib_internal::ParameterListEx& pars, const CLArgs& args, const struct Region& reg) const
{
 std::unique_ptr<struct Parameters> ppar{new struct Parameters};

 ppar->lonb = reg.lonb;
 ppar->lone = reg.lone;
 ppar->latb = reg.latb;
 ppar->late = reg.late;

 pars.SetParameter("lonb", ppar->lonb);
 pars.SetParameter("latb", ppar->latb);
 pars.SetParameter("lone", ppar->lone);
 pars.SetParameter("late", ppar->late);

 return {ppar.release(), ""};
}

MODISBINLOCALData::Data MODISBINLOCALData::Read(const MString& var, const BaseParameters* ip, size_t tind) const
{
 auto p = pointer_cast<const struct Parameters*>(ip);

 Averager<Data> out;

 for(const auto& suf: dataset)
 {
  Data dat = ReadFile(suf, p, tind);
  if(dat) out.Add(dat);
 }
 return out.Div();
}

MODISBINLOCALData::Data MODISBINLOCALData::ReadFile(const MString& suf, const struct MODISBINLOCALData::Parameters* p, size_t tind) const
{
 michlib::NCFileA nc;
 michlib::message("Reading " + datapath + "/" + times[tind].ToString() + "_" + suf + ".nc");
 nc.Reset(datapath + "/" + times[tind].ToString() + "_" + suf + ".nc");
 if(!nc) return Data();
 MString dname, unit;
 if(suf == "A_CHL" || suf == "T_CHL") dname = "chlor_a";
 if(suf == "A_SST" || suf == "T_SST") dname = "sst";
 if(suf == "A_NSST" || suf == "T_NSST") dname = "sst";
 if(suf == "A_SST4" || suf == "T_SST4") dname = "sst4";
 if(suf == "A_CHL" || suf == "T_CHL")
  unit = "mg m-3";
 else
  unit = "degrees_C";

 struct BinIndexType
 {
  uint4 start_num;
  uint4 begin;
  uint4 extent;
  uint4 max;
 };
 struct BinListType
 {
  uint4 bin_num;
  uint2 nobs;
  uint2 nscenes;
  float weights;
  float time_rec;
 };
 struct BinDataType
 {
  float sum;
  float sum_squared;
 };

 std::vector<uint4> beg;
 std::vector<uint4> loc;
 std::vector<float> val;

 std::vector<uint4> bins;

 // Read index
 {
  auto ind = nc.V<struct BinIndexType>("/level-3_binned_data/BinIndex");
  if(!ind) return Data();
  beg.resize(ind.DimLen(0) + 1);
  beg[0] = 1;
  for(size_t i = 1; i <= ind.DimLen(0); i++) beg[i] = beg[i - 1] + ind(i - 1).max;
 }

 size_t ilatb, ilate;
 {
  size_t nr = beg.size() - 2;
  ilatb     = static_cast<size_t>(Ceil((p->latb + 90.0) * nr / 180.0 - 0.5));
  ilate     = static_cast<size_t>(Floor((p->late + 90.0) * nr / 180.0 - 0.5));
 }

 for(size_t i = ilatb; i <= ilate; i++)
 {
  real   lb = michlib::ToGeoDomainNeg(p->lonb);
  real   le = michlib::ToGeoDomainNeg(p->lone);
  size_t nl = beg[i + 1] - beg[i];
  size_t ilonb, ilone, il;
  ilonb = static_cast<size_t>(Ceil((lb + 180.0) * nl / 360.0 - 0.5));
  ilone = static_cast<size_t>(Floor((le + 180.0) * nl / 360.0 - 0.5));
  il    = ilonb;
  do bins.push_back(beg[i] + il);
  while(++il % nl != ilone + 1);
 }
 std::sort(bins.begin(), bins.end());

 auto InReg = [&bins = std::as_const(bins)](uint4 n) -> size_t
 {
  size_t a = 0, b = bins.size() - 1;
  if(bins[a] == n) return a;
  if(bins[b] == n) return b;
  while(true)
  {
   size_t c = (a + b) / 2;
   if(bins[c] == n) return c;
   if(n < bins[c])
    b = c;
   else
    a = c;
   if(b - a == 1) return bins.size();
  }
 };

 auto Row = [&beg = std::as_const(beg)](uint4 n) -> size_t
 {
  if(n >= beg.back() || n == 0) return beg.size() - 1;
  size_t a = 0, b = beg.size() - 2;
  if(n >= beg[a] && n < beg[a + 1]) return a;
  if(n >= beg[b] && n < beg[b + 1]) return b;
  while(true)
  {
   size_t c = (a + b) / 2;
   if(n >= beg[c] && n < beg[c + 1]) return c;
   if(n < beg[c])
    b = c;
   else
    a = c;
  }
 };
 auto Lat = [&Row = Row](uint4 n)
 {
  auto r  = Row(n);
  auto nr = Row(0) - 1; // Number of rows
  return -90.0 + (r + 0.5) * (180.0 / nr);
 };
 auto Lon = [&Row = Row, &beg = std::as_const(beg)](uint4 n) -> real
 {
  auto r = Row(n);
  if(r == beg.size() - 1) return NAN;
  return -180.0 + (n - beg[r] + 0.5) * (360.0 / (beg[r + 1] - beg[r]));
 };

 {
  auto lst = nc.V<struct BinListType>("/level-3_binned_data/BinList");
  if(!lst) return Data();
  auto dat = nc.V<struct BinDataType>("/level-3_binned_data/" + dname);
  if(!dat) return Data();
  if(dat.DimLen(0) != lst.DimLen(0)) return Data();
  val.resize(dat.DimLen(0));
  loc.resize(lst.DimLen(0));
  for(size_t i = 0; i < dat.DimLen(0); i++)
  {
   loc[i] = lst(i).bin_num;
   val[i] = dat(i).sum / lst(i).weights;
  }
 }
 if(loc.size() != val.size()) return Data();

 Data out(
     bins.size(), [&bins = std::as_const(bins), &Lon = Lon](size_t i) { return Lon(bins[i]); }, [&bins = std::as_const(bins), &Lat = Lat](size_t i) { return Lat(bins[i]); });
 for(size_t i = 0; i < out.N(); i++) out(i) = out.Fillval();
 out.SetUnit(unit);

 for(size_t i = 0; i < loc.size(); i++)
 {
  auto ind = InReg(loc[i]);
  if(ind < bins.size()) out.V(ind) = val[i];
 }
 return out;
}

bool MODISBINLOCALData::SufFromDataset(const MString& datasetstr)
{
 std::set<MString> sufs;
 auto              words = michlib::Split_on_words(datasetstr, ", \t\x00", false);
 bool              ischl = words.front() == "A_CHL" || words.front() == "T_CHL" || words.front() == "CHL";

 for(auto ci = words.cbegin(); ci != words.cend(); ++ci)
 {
  if(ischl && (*ci == "A_CHL" || *ci == "CHL")) sufs.insert("A_CHL");
  if(ischl && (*ci == "T_CHL" || *ci == "CHL")) sufs.insert("T_CHL");
  if(!ischl && (*ci == "A_SST" || *ci == "SST" || *ci == "DSST" || *ci == "A_DSST" || *ci == "A_ALL" || *ci == "ALL")) sufs.insert("A_SST");
  if(!ischl && (*ci == "T_SST" || *ci == "SST" || *ci == "DSST" || *ci == "T_DSST" || *ci == "T_ALL" || *ci == "ALL")) sufs.insert("T_SST");
  if(!ischl && (*ci == "A_SST4" || *ci == "SST4" || *ci == "DSST" || *ci == "A_DSST" || *ci == "A_ALL" || *ci == "ALL")) sufs.insert("A_SST4");
  if(!ischl && (*ci == "T_SST4" || *ci == "SST4" || *ci == "DSST" || *ci == "T_DSST" || *ci == "T_ALL" || *ci == "ALL")) sufs.insert("T_SST4");
  if(!ischl && (*ci == "A_NSST" || *ci == "NSST" || *ci == "A_ALL" || *ci == "ALL")) sufs.insert("A_NSST");
  if(!ischl && (*ci == "T_NSST" || *ci == "NSST" || *ci == "T_ALL" || *ci == "ALL")) sufs.insert("T_NSST");
 }
 for(const auto& w: sufs) dataset.push_back(w);
 return ischl;
}